Topic outline

  • Groups

    Group 1:

    Maryam Astero, maryam.astero@aalto.fi
    Lassi Härtsiä, lassi.hartsia@aalto.fi
    Tuula Tenkanen, tuula.tenkanen@aalto.fi

    Oral presentation paper:
    Ruiz Puentes, P., Rueda-Gensini, L., Valderrama, N., Hernández, I., González, C., Daza, L., Muñoz-Camargo, C., Cruz, J.C. and Arbeláez, P., 2022. Predicting target–ligand interactions with graph convolutional networks for interpretable pharmaceutical discovery. Scientific reports, 12(1), pp.1-17. 
    https://www.nature.com/articles/s41598-022-12180-x

    Group 2:

    Mariam Jalomie, mariam.jalomie@aalto.fi
    Rafal Karczewski, rafal.karczewski@aalto.fi
    Tien Le, tien.le@aalto.fi
    Anni Heinolainen, anni.heinolainen@aalto.fi

    Oral presentation paper:
    Lewin-Epstein, O., Baruch, S., Hadany, L., Stein, G.Y. and Obolski, U., 2021. Predicting antibiotic resistance in hospitalized patients by applying machine learning to electronic medical records. Clinical Infectious Diseases, 72(11), pp.e848-e855.
    https://academic.oup.com/cid/article/72/11/e848/5929660

    Group 3:

    Shiva Ayoubzadeh, shiva.ayoubzadeh@aalto.fi
    Tytti Jämsä, tytti.jamsa@aalto.fi
    Artur Gynter, artur.gynter@aalto.fi
    Mona Halme, mona.halme@aalto.fi

    Oral presentation paper:
    Rampášek, L., Hidru, D., Smirnov, P., Haibe-Kains, B. and Goldenberg, A., 2019. Dr. VAE: improving drug response prediction via modeling of drug perturbation effects. Bioinformatics, 35(19), pp.3743-3751.
    https://academic.oup.com/bioinformatics/article/35/19/3743/5372343

    Group 4:
    Iiris Pitko, iiris.pitko@aalto.fi
    Henri Välimäki, henri.valimaki@aalto.fi
    Nea Möttönen, nea.mottonen@aalto.fi
    Anttoni Ojanperä, anttoni.ojanpera@aalto.fi 

    Oral presentation paper:
    Julkunen, H., Cichonska, A., Gautam, P., Szedmak, S., Douat, J., Pahikkala, T., Aittokallio, T. and Rousu, J., 2020. Leveraging multi-way interactions for systematic prediction of pre-clinical drug combination effects. Nature communications, 11(1), p.6136.
    https://www.nature.com/articles/s41467-020-19950-z

    Group 5:
    Amirreza Akbari, amirreza.akbari@aalto.fi
    Huy Nguyen, huy.t.nguyen@aalto.fi
    Khoa Nguyen, khoa.nguyen@aalto.fi

    Oral presentation paper:
    Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A. and Bridgland, A., 2021. Highly accurate protein structure prediction with AlphaFold. Nature, 596(7873), pp.583-589.
    https://www.nature.com/articles/s41586-021-03819-2

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